IL_9KDV_142

3D structure

PDB id

9KDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

CCCCGGAUAG*UGCGGAGAG

Length

19 nucleotides

Bulged bases

9KDV|1|L5|C|4411, 9KDV|1|L5|C|4412, 9KDV|1|L5|A|4418, 9KDV|1|L5|G|4516, 9KDV|1|L5|C|4517, 9KDV|1|L5|G|4519, 9KDV|1|L5|A|4522

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KDV|1|L5|C|4410
9KDV|1|L5|C|4411
9KDV|1|L5|C|4412
9KDV|1|L5|C|4413
9KDV|1|L5|G|4414
9KDV|1|L5|G|4415
9KDV|1|L5|A|4416
9KDV|1|L5|U|4417
9KDV|1|L5|A|4418
9KDV|1|L5|G|4419
*
9KDV|1|L5|U|4515
9KDV|1|L5|G|4516
9KDV|1|L5|C|4517
9KDV|1|L5|G|4518
9KDV|1|L5|G|4519
9KDV|1|L5|A|4520
9KDV|1|L5|G|4521
9KDV|1|L5|A|4522
9KDV|1|L5|G|4523

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LE

Large ribosomal subunit protein eL6

Chain LH

Large ribosomal subunit protein uL6

Chain LM

Large ribosomal subunit protein eL14

Chain LO

Large ribosomal subunit protein uL13

Chain LS

Large ribosomal subunit protein eL20