IL_9KDV_168

3D structure

PDB id

9KDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

UUUCGA*UG

Length

8 nucleotides

Bulged bases

9KDV|1|S2|U|369, 9KDV|1|S2|C|370, 9KDV|1|S2|G|371

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KDV|1|S2|U|367
9KDV|1|S2|U|368
9KDV|1|S2|U|369
9KDV|1|S2|C|370
9KDV|1|S2|G|371
9KDV|1|S2|A|372
*
9KDV|1|S2|U|394
9KDV|1|S2|G|395

Current chains

Chain S2

Mus musculus 18S ribosomal RNA

Nearby chains

Chain L5

Large subunit ribosomal RNA; LSU rRNA

Chain SI

Small ribosomal subunit protein eS8

Chain SL

Small ribosomal subunit protein uS17