IL_9KDV_177
3D structure
- PDB id
- 9KDV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.33 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUUC
- Length
- 16 nucleotides
- Bulged bases
- 9KDV|1|S2|A|629, 9KDV|1|S2|U|631, 9KDV|1|S2|U|632
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9KDV|1|S2|G|612
9KDV|1|S2|U|613
9KDV|1|S2|G|614
9KDV|1|S2|C|615
9KDV|1|S2|C|616
9KDV|1|S2|A|617
9KDV|1|S2|G|618
*
9KDV|1|S2|C|625
9KDV|1|S2|G|626
9KDV|1|S2|G|627
9KDV|1|S2|U|628
9KDV|1|S2|A|629
9KDV|1|S2|A|630
9KDV|1|S2|U|631
9KDV|1|S2|U|632
9KDV|1|S2|C|633
Current chains
- Chain S2
- Mus musculus 18S ribosomal RNA
Nearby chains
- Chain S7
- Transfer RNA; tRNA
- Chain SD
- Small ribosomal subunit protein uS3
- Chain SX
- Small ribosomal subunit protein uS12
- Chain Se
- Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein
- Chain Sx
- RNA (5'-R(P*AP*UP*CP*AP*UP*GP*AP*AP*GP*U)-3')
Coloring options: