IL_9KKF_012

3D structure

PDB id

9KKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 40S ribosome complexed with HCV IRES and eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

9KKF|1|S2|U|172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KKF|1|S2|G|145
9KKF|1|S2|G|146
9KKF|1|S2|A|147
9KKF|1|S2|U|148
9KKF|1|S2|A|149
9KKF|1|S2|A|150
9KKF|1|S2|C|151
*
9KKF|1|S2|G|167
9KKF|1|S2|C|168
9KKF|1|S2|U|169
9KKF|1|S2|A|170
9KKF|1|S2|A|171
9KKF|1|S2|U|172
9KKF|1|S2|A|173
9KKF|1|S2|C|174

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SG

40S ribosomal protein S6

Chain SY

40S ribosomal protein S24