IL_9KKF_016

3D structure

PDB id

9KKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 40S ribosome complexed with HCV IRES and eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CCG*CCGG

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9KKF_016 not in the Motif Atlas

Geometric match to IL_8GLP_064

Geometric discrepancy: 0.3205

The information below is about IL_8GLP_064

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_16315.2

Basepair signature

cWW-cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

9KKF|1|S2|C|238
9KKF|1|S2|C|239
9KKF|1|S2|G|240
*
9KKF|1|S2|C|277
9KKF|1|S2|C|278
9KKF|1|S2|G|279
9KKF|1|S2|G|280

Current chains

Chain S2

18S ribosomal RNA

Nearby chains