IL_9KKF_020

3D structure

PDB id

9KKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 40S ribosome complexed with HCV IRES and eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UAUCAA*UGACCACG

Length

14 nucleotides

Bulged bases

9KKF|1|S2|U|361, 9KKF|1|S2|C|399, 9KKF|1|S2|C|400

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KKF|1|S2|U|359
9KKF|1|S2|A|360
9KKF|1|S2|U|361
9KKF|1|S2|C|362
9KKF|1|S2|A|363
9KKF|1|S2|A|364
*
9KKF|1|S2|U|396
9KKF|1|S2|G|397
9KKF|1|S2|A|398
9KKF|1|S2|C|399
9KKF|1|S2|C|400
9KKF|1|S2|A|401
9KKF|1|S2|C|402
9KKF|1|S2|G|403

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SI

40S ribosomal protein S8

Chain SL

40S ribosomal protein S11

Chain SX

40S ribosomal protein S23