IL_9KKF_035

3D structure

PDB id

9KKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 40S ribosome complexed with HCV IRES and eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUGCCAG*CGGUAAUUC

Length

16 nucleotides

Bulged bases

9KKF|1|S2|A|628, 9KKF|1|S2|U|630, 9KKF|1|S2|U|631

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KKF|1|S2|G|611
9KKF|1|S2|U|612
9KKF|1|S2|G|613
9KKF|1|S2|C|614
9KKF|1|S2|C|615
9KKF|1|S2|A|616
9KKF|1|S2|G|617
*
9KKF|1|S2|C|624
9KKF|1|S2|G|625
9KKF|1|S2|G|626||A
9KKF|1|S2|U|627
9KKF|1|S2|A|628
9KKF|1|S2|A|629
9KKF|1|S2|U|630
9KKF|1|S2|U|631
9KKF|1|S2|C|632

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SD

40S ribosomal protein S3

Chain SX

40S ribosomal protein S23

Chain Se

40S ribosomal protein S30