IL_9KKF_064
3D structure
- PDB id
- 9KKF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the human 40S ribosome complexed with HCV IRES and eIF3
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CCU*GCG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9KKF_064 not in the Motif Atlas
- Homologous match to IL_9H3G_213
- Geometric discrepancy: 0.0931
- The information below is about IL_9H3G_213
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_01003.7
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 240
Unit IDs
9KKF|1|S2|C|1230
9KKF|1|S2|C|1231
9KKF|1|S2|U|1232
*
9KKF|1|S2|G|1526
9KKF|1|S2|C|1527
9KKF|1|S2|G|1528
Current chains
- Chain S2
- 18S ribosomal RNA
Nearby chains
- Chain SQ
- 40S ribosomal protein S16
- Chain SS
- 40S ribosomal protein S18
- Chain ST
- 40S ribosomal protein S19
- Chain SU
- 40S ribosomal protein S20
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