IL_9KMT_028

3D structure

PDB id

9KMT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat SARSr-CoV RaTG15 Nsp1 bound to the Human 40S Ribosomal subunit-State1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.81 Å

Loop

Sequence

GUGCCAG*CGGUAAUUC

Length

16 nucleotides

Bulged bases

9KMT|1|2|A|628

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KMT|1|2|G|611
9KMT|1|2|U|612
9KMT|1|2|G|613
9KMT|1|2|C|614
9KMT|1|2|C|615
9KMT|1|2|A|616
9KMT|1|2|G|617
*
9KMT|1|2|C|624
9KMT|1|2|G|625
9KMT|1|2|G|626
9KMT|1|2|U|627
9KMT|1|2|A|628
9KMT|1|2|A|629
9KMT|1|2|U|630
9KMT|1|2|U|631
9KMT|1|2|C|632

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D

Small ribosomal subunit protein uS3

Chain X

Small ribosomal subunit protein uS12

Chain e

Small ribosomal subunit protein eS30

Chain n

ORF1ab polyprotein