IL_9KMT_053

3D structure

PDB id

9KMT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat SARSr-CoV RaTG15 Nsp1 bound to the Human 40S Ribosomal subunit-State1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.81 Å

Loop

Sequence

UGCAU*AUG

Length

8 nucleotides

Bulged bases

9KMT|1|2|C|1331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KMT|1|2|U|1329
9KMT|1|2|G|1330
9KMT|1|2|C|1331
9KMT|1|2|A|1332
9KMT|1|2|U|1333
*
9KMT|1|2|A|1498
9KMT|1|2|U|1499
9KMT|1|2|G|1500

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D

Small ribosomal subunit protein uS3

Chain K

Small ribosomal subunit protein eS10

Chain U

Small ribosomal subunit protein uS10

Chain d

Small ribosomal subunit protein uS14

Chain f

Small ribosomal subunit protein eS31

Chain n

ORF1ab polyprotein