IL_9KMU_029

3D structure

PDB id

9KMU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat SARSr-CoV RaTG15 Nsp1 bound to the Human 40S Ribosomal subunit-State2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

GAG*CGAGGAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9KMU_029 not in the Motif Atlas

Homologous match to IL_9PN5_168

Geometric discrepancy: 0.1065

The information below is about IL_9PN5_168

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_02511.3

Basepair signature

cWW-tSH-L-cWW-L-L-R-L

Number of instances in this motif group

4

Unit IDs

9KMU|1|2|G|563
9KMU|1|2|A|564
9KMU|1|2|G|565
*
9KMU|1|2|C|585
9KMU|1|2|G|586
9KMU|1|2|A|587
9KMU|1|2|G|588
9KMU|1|2|G|589
9KMU|1|2|A|590
9KMU|1|2|U|591
9KMU|1|2|C|592

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain J

Small ribosomal subunit protein uS4

Chain e

Small ribosomal subunit protein eS30