IL_9KMV_011

3D structure

PDB id

9KMV (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARSr-MpCoV-GX Nsp1 bound to the Human 40S Ribosomal subunit-State1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

9KMV|1|2|G|146, 9KMV|1|2|A|147, 9KMV|1|2|U|172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KMV|1|2|G|145
9KMV|1|2|G|146
9KMV|1|2|A|147
9KMV|1|2|U|148
9KMV|1|2|A|149
9KMV|1|2|A|150
9KMV|1|2|C|151
*
9KMV|1|2|G|167
9KMV|1|2|C|168
9KMV|1|2|U|169
9KMV|1|2|A|170
9KMV|1|2|A|171
9KMV|1|2|U|172
9KMV|1|2|A|173
9KMV|1|2|C|174

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain G

Small ribosomal subunit protein eS6

Chain Y

Small ribosomal subunit protein eS24