IL_9KMW_015

3D structure

PDB id

9KMW (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARSr-MpCoV-GX Nsp1 bound to the Human 40S Ribosomal subunit-State2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.73 Å

Loop

Sequence

CAUUU*AACCUCGGG

Length

14 nucleotides

Bulged bases

9KMW|1|2|U|305, 9KMW|1|2|C|306, 9KMW|1|2|G|307, 9KMW|1|2|G|308

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KMW|1|2|C|216
9KMW|1|2|A|217
9KMW|1|2|U|218
9KMW|1|2|U|219
9KMW|1|2|U|220
*
9KMW|1|2|A|301
9KMW|1|2|A|302
9KMW|1|2|C|303
9KMW|1|2|C|304
9KMW|1|2|U|305
9KMW|1|2|C|306
9KMW|1|2|G|307
9KMW|1|2|G|308
9KMW|1|2|G|309

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

Small ribosomal subunit protein eS4, X isoform

Chain I

Small ribosomal subunit protein eS8