IL_9KMW_026
3D structure
- PDB id
- 9KMW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARSr-MpCoV-GX Nsp1 bound to the Human 40S Ribosomal subunit-State2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.73 Å
Loop
- Sequence
- UACAG*CCUGUA
- Length
- 11 nucleotides
- Bulged bases
- 9KMW|1|2|U|553
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9KMW_026 not in the Motif Atlas
- Geometric match to IL_7VYX_008
- Geometric discrepancy: 0.3889
- The information below is about IL_7VYX_008
- Detailed Annotation
- Partly complementary
- Broad Annotation
- Partly complementary
- Motif group
- IL_71154.6
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 18
Unit IDs
9KMW|1|2|U|530
9KMW|1|2|A|531
9KMW|1|2|C|532
9KMW|1|2|A|533
9KMW|1|2|G|534
*
9KMW|1|2|C|549
9KMW|1|2|C|550
9KMW|1|2|U|551
9KMW|1|2|G|552
9KMW|1|2|U|553
9KMW|1|2|A|554
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain J
- Small ribosomal subunit protein uS4
- Chain e
- Small ribosomal subunit protein eS30
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