IL_9KMW_045

3D structure

PDB id

9KMW (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARSr-MpCoV-GX Nsp1 bound to the Human 40S Ribosomal subunit-State2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.73 Å

Loop

Sequence

CGGGG*CAAG

Length

9 nucleotides

Bulged bases

9KMW|1|2|G|933

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9KMW_045 not in the Motif Atlas

Homologous match to IL_9PN5_185

Geometric discrepancy: 0.145

The information below is about IL_9PN5_185

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.5

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

42

Unit IDs

9KMW|1|2|C|931
9KMW|1|2|G|932
9KMW|1|2|G|933
9KMW|1|2|G|934
9KMW|1|2|G|935
*
9KMW|1|2|C|1007
9KMW|1|2|A|1008
9KMW|1|2|A|1009
9KMW|1|2|G|1010

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain B

Small ribosomal subunit protein eS1

Chain N

Small ribosomal subunit protein uS15

Chain a

Small ribosomal subunit protein eS26