IL_9KMW_062

3D structure

PDB id

9KMW (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARSr-MpCoV-GX Nsp1 bound to the Human 40S Ribosomal subunit-State2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.73 Å

Loop

Sequence

CUAACUA*UUCUUAG

Length

14 nucleotides

Bulged bases

9KMW|1|2|C|1403, 9KMW|1|2|U|1404, 9KMW|1|2|C|1443

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KMW|1|2|C|1399
9KMW|1|2|U|1400
9KMW|1|2|A|1401
9KMW|1|2|A|1402
9KMW|1|2|C|1403
9KMW|1|2|U|1404
9KMW|1|2|A|1405
*
9KMW|1|2|U|1441
9KMW|1|2|U|1442
9KMW|1|2|C|1443
9KMW|1|2|U|1444
9KMW|1|2|U|1445
9KMW|1|2|A|1446
9KMW|1|2|G|1447

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D

Small ribosomal subunit protein uS3

Chain Q

Small ribosomal subunit protein uS9

Chain U

Small ribosomal subunit protein uS10

Chain g

Small ribosomal subunit protein RACK1