IL_9KMW_063

3D structure

PDB id

9KMW (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARSr-MpCoV-GX Nsp1 bound to the Human 40S Ribosomal subunit-State2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.73 Å

Loop

Sequence

GACUGGCUCAGCGUG*CCGUUGAACCCCAUUC

Length

31 nucleotides

Bulged bases

9KMW|1|2|U|1585, 9KMW|1|2|G|1587, 9KMW|1|2|C|1593, 9KMW|1|2|U|1596

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KMW|1|2|G|1536
9KMW|1|2|A|1537
9KMW|1|2|C|1538
9KMW|1|2|U|1539
9KMW|1|2|G|1540
9KMW|1|2|G|1541
9KMW|1|2|C|1542
9KMW|1|2|U|1543
9KMW|1|2|C|1544
9KMW|1|2|A|1545
9KMW|1|2|G|1546
9KMW|1|2|C|1547
9KMW|1|2|G|1548
9KMW|1|2|U|1549
9KMW|1|2|G|1550
*
9KMW|1|2|C|1582
9KMW|1|2|C|1583
9KMW|1|2|G|1584
9KMW|1|2|U|1585
9KMW|1|2|U|1586
9KMW|1|2|G|1587
9KMW|1|2|A|1588
9KMW|1|2|A|1589
9KMW|1|2|C|1590
9KMW|1|2|C|1591
9KMW|1|2|C|1592
9KMW|1|2|C|1593
9KMW|1|2|A|1594
9KMW|1|2|U|1595
9KMW|1|2|U|1596
9KMW|1|2|C|1597

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D

Small ribosomal subunit protein uS3

Chain F

Small ribosomal subunit protein uS7

Chain Q

Small ribosomal subunit protein uS9

Chain S

Small ribosomal subunit protein uS13

Chain T

Small ribosomal subunit protein eS19

Chain U

Small ribosomal subunit protein uS10

Chain Z

Small ribosomal subunit protein eS25

Chain d

Small ribosomal subunit protein uS14