IL_9KMW_072

3D structure

PDB id

9KMW (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARSr-MpCoV-GX Nsp1 bound to the Human 40S Ribosomal subunit-State2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.73 Å

Loop

Sequence

CGAUUGGAUGGUUUAGUGAG*CGAACUUGACUAUCUAGAG

Length

39 nucleotides

Bulged bases

9KMW|1|2|U|1721, 9KMW|1|2|U|1725, 9KMW|1|2|C|1802, 9KMW|1|2|U|1803, 9KMW|1|2|U|1804, 9KMW|1|2|G|1805, 9KMW|1|2|A|1806, 9KMW|1|2|U|1808

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KMW|1|2|C|1717
9KMW|1|2|G|1718
9KMW|1|2|A|1719
9KMW|1|2|U|1720
9KMW|1|2|U|1721
9KMW|1|2|G|1722
9KMW|1|2|G|1723
9KMW|1|2|A|1724
9KMW|1|2|U|1725
9KMW|1|2|G|1726
9KMW|1|2|G|1727
9KMW|1|2|U|1728
9KMW|1|2|U|1729
9KMW|1|2|U|1730
9KMW|1|2|A|1731
9KMW|1|2|G|1732
9KMW|1|2|U|1733
9KMW|1|2|G|1734
9KMW|1|2|A|1735
9KMW|1|2|G|1736
*
9KMW|1|2|C|1798
9KMW|1|2|G|1799
9KMW|1|2|A|1800
9KMW|1|2|A|1801
9KMW|1|2|C|1802
9KMW|1|2|U|1803
9KMW|1|2|U|1804
9KMW|1|2|G|1805
9KMW|1|2|A|1806
9KMW|1|2|C|1807
9KMW|1|2|U|1808
9KMW|1|2|A|1809
9KMW|1|2|U|1810
9KMW|1|2|C|1811
9KMW|1|2|U|1812
9KMW|1|2|A|1813
9KMW|1|2|G|1814
9KMW|1|2|A|1815
9KMW|1|2|G|1816

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain G

Small ribosomal subunit protein eS6

Chain I

Small ribosomal subunit protein eS8

Chain X

Small ribosomal subunit protein uS12

Chain h

Small ribosomal subunit protein eS32