IL_9KMX_015

3D structure

PDB id

9KMX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat MERSr-CoV NeoCoV Nsp1 bound to the Human 40S Ribosomal subunit-State1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

UUUCGA*UG

Length

8 nucleotides

Bulged bases

9KMX|1|2|U|368, 9KMX|1|2|C|369

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9KMX_015 not in the Motif Atlas

Homologous match to IL_9PN5_160

Geometric discrepancy: 0.4873

The information below is about IL_9PN5_160

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01372.4

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

5

Unit IDs

9KMX|1|2|U|366
9KMX|1|2|U|367
9KMX|1|2|U|368
9KMX|1|2|C|369
9KMX|1|2|G|370
9KMX|1|2|A|371
*
9KMX|1|2|U|393
9KMX|1|2|G|394

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain I

Small ribosomal subunit protein eS8

Chain L

Small ribosomal subunit protein uS17