IL_9KMX_050

3D structure

PDB id

9KMX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat MERSr-CoV NeoCoV Nsp1 bound to the Human 40S Ribosomal subunit-State1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

ACCA*UCCCU

Length

9 nucleotides

Bulged bases

9KMX|1|2|C|1215, 9KMX|1|2|C|1216

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9KMX_050 not in the Motif Atlas

Homologous match to IL_9H3G_212

Geometric discrepancy: 0.0959

The information below is about IL_9H3G_212

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_63596.15

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

24

Unit IDs

9KMX|1|2|A|1214
9KMX|1|2|C|1215
9KMX|1|2|C|1216
9KMX|1|2|A|1217
*
9KMX|1|2|U|1681
9KMX|1|2|C|1682
9KMX|1|2|C|1683
9KMX|1|2|C|1684
9KMX|1|2|U|1685

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain F

Small ribosomal subunit protein uS7

Chain Q

Small ribosomal subunit protein uS9

Chain a

Small ribosomal subunit protein eS26

Chain c

Small ribosomal subunit protein eS28