IL_9KMY_030

3D structure

PDB id

9KMY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat MERSr-CoV NeoCoV Nsp1 bound to the Human 40S Ribosomal subunit-State2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUGCCAG*CGGUAAUUC

Length

16 nucleotides

Bulged bases

9KMY|1|2|A|628

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KMY|1|2|G|611
9KMY|1|2|U|612
9KMY|1|2|G|613
9KMY|1|2|C|614
9KMY|1|2|C|615
9KMY|1|2|A|616
9KMY|1|2|G|617
*
9KMY|1|2|C|624
9KMY|1|2|G|625
9KMY|1|2|G|626
9KMY|1|2|U|627
9KMY|1|2|A|628
9KMY|1|2|A|629
9KMY|1|2|U|630
9KMY|1|2|U|631
9KMY|1|2|C|632

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D

Small ribosomal subunit protein uS3

Chain X

Small ribosomal subunit protein uS12

Chain e

Small ribosomal subunit protein eS30

Chain n

ORF1ab polyprotein