IL_9KMY_035

3D structure

PDB id

9KMY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat MERSr-CoV NeoCoV Nsp1 bound to the Human 40S Ribosomal subunit-State2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

AC*GAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9KMY_035 not in the Motif Atlas

Homologous match to IL_9PN5_178

Geometric discrepancy: 0.1107

The information below is about IL_9PN5_178

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_73108.5

Basepair signature

cWW-cWS-cSH-cWW

Number of instances in this motif group

26

Unit IDs

9KMY|1|2|A|802
9KMY|1|2|C|803
*
9KMY|1|2|G|860
9KMY|1|2|A|861
9KMY|1|2|A|862
9KMY|1|2|U|863

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain H

Small ribosomal subunit protein eS7

Chain L

Small ribosomal subunit protein uS17

Chain W

Small ribosomal subunit protein uS8

Chain X

Small ribosomal subunit protein uS12