IL_9KMZ_032

3D structure

PDB id

9KMZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat MERSr-CoV NL140422 Nsp1 bound to the Human 40S Ribosomal subunit-State1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

GUGCCAG*CGGUAAUUC

Length

16 nucleotides

Bulged bases

9KMZ|1|2|A|628, 9KMZ|1|2|U|630, 9KMZ|1|2|U|631

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KMZ|1|2|G|611
9KMZ|1|2|U|612
9KMZ|1|2|G|613
9KMZ|1|2|C|614
9KMZ|1|2|C|615
9KMZ|1|2|A|616
9KMZ|1|2|G|617
*
9KMZ|1|2|C|624
9KMZ|1|2|G|625
9KMZ|1|2|G|626
9KMZ|1|2|U|627
9KMZ|1|2|A|628
9KMZ|1|2|A|629
9KMZ|1|2|U|630
9KMZ|1|2|U|631
9KMZ|1|2|C|632

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D

Small ribosomal subunit protein uS3

Chain X

Small ribosomal subunit protein uS12

Chain e

Small ribosomal subunit protein eS30

Chain n

ORF1ab polyprotein