IL_9KMZ_046

3D structure

PDB id

9KMZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat MERSr-CoV NL140422 Nsp1 bound to the Human 40S Ribosomal subunit-State1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

GCUAG*CUUGGACC

Length

13 nucleotides

Bulged bases

9KMZ|1|2|U|969, 9KMZ|1|2|G|970

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9KMZ_046 not in the Motif Atlas

Geometric match to IL_8GLP_240

Geometric discrepancy: 0.2081

The information below is about IL_8GLP_240

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_71972.2

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

12

Unit IDs

9KMZ|1|2|G|952
9KMZ|1|2|C|953
9KMZ|1|2|U|954
9KMZ|1|2|A|955
9KMZ|1|2|G|956
*
9KMZ|1|2|C|967
9KMZ|1|2|U|968
9KMZ|1|2|U|969
9KMZ|1|2|G|970
9KMZ|1|2|G|971
9KMZ|1|2|A|972
9KMZ|1|2|C|973
9KMZ|1|2|C|974

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain B

Small ribosomal subunit protein eS1

Chain O

Small ribosomal subunit protein uS11