IL_9KMZ_048

3D structure

PDB id

9KMZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat MERSr-CoV NL140422 Nsp1 bound to the Human 40S Ribosomal subunit-State1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

CGAAG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9KMZ_048 not in the Motif Atlas

Homologous match to IL_9H3G_204

Geometric discrepancy: 0.1009

The information below is about IL_9H3G_204

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05821.4

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

21

Unit IDs

9KMZ|1|2|C|1047
9KMZ|1|2|G|1048
9KMZ|1|2|A|1049
9KMZ|1|2|A|1050
9KMZ|1|2|G|1051
*
9KMZ|1|2|C|1067
9KMZ|1|2|G|1068
9KMZ|1|2|U|1069
9KMZ|1|2|A|1070
9KMZ|1|2|G|1071

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain O

Small ribosomal subunit protein uS11

Chain a

Small ribosomal subunit protein eS26