IL_9KN0_024

3D structure

PDB id

9KN0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat MERSr-CoV NL140422 Nsp1 bound to the Human 40S Ribosomal subunit-State2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CCACU*AG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9KN0_024 not in the Motif Atlas

Homologous match to IL_9PN5_165

Geometric discrepancy: 0.0747

The information below is about IL_9PN5_165

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_26900.4

Basepair signature

cWW-cSH-cWS-tWH-cWW

Number of instances in this motif group

7

Unit IDs

9KN0|1|2|C|491
9KN0|1|2|C|492
9KN0|1|2|A|493
9KN0|1|2|C|494
9KN0|1|2|U|495
*
9KN0|1|2|A|508
9KN0|1|2|G|509

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

Small ribosomal subunit protein eS4, X isoform

Chain J

Small ribosomal subunit protein uS4

Chain Y

Small ribosomal subunit protein eS24