IL_9KN0_049

3D structure

PDB id

9KN0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat MERSr-CoV NL140422 Nsp1 bound to the Human 40S Ribosomal subunit-State2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GCUAG*CUUGGACC

Length

13 nucleotides

Bulged bases

9KN0|1|2|G|970

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9KN0_049 not in the Motif Atlas

Homologous match to IL_9H3G_202

Geometric discrepancy: 0.1844

The information below is about IL_9H3G_202

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_71972.2

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

12

Unit IDs

9KN0|1|2|G|952
9KN0|1|2|C|953
9KN0|1|2|U|954
9KN0|1|2|A|955
9KN0|1|2|G|956
*
9KN0|1|2|C|967
9KN0|1|2|U|968
9KN0|1|2|U|969
9KN0|1|2|G|970
9KN0|1|2|G|971
9KN0|1|2|A|972
9KN0|1|2|C|973
9KN0|1|2|C|974

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain B

Small ribosomal subunit protein eS1

Chain O

Small ribosomal subunit protein uS11