IL_9KN0_056
3D structure
- PDB id
- 9KN0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Bat MERSr-CoV NL140422 Nsp1 bound to the Human 40S Ribosomal subunit-State2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.65 Å
Loop
- Sequence
- GGAGUAUG*UGAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9KN0_056 not in the Motif Atlas
- Homologous match to IL_9PN5_194
- Geometric discrepancy: 0.0589
- The information below is about IL_9PN5_194
- Detailed Annotation
- 8x6 Sarcin-Ricin with inserted Y; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_84044.4
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
- Number of instances in this motif group
- 7
Unit IDs
9KN0|1|2|G|1168
9KN0|1|2|G|1169
9KN0|1|2|A|1170
9KN0|1|2|G|1171
9KN0|1|2|U|1172
9KN0|1|2|A|1173
9KN0|1|2|U|1174
9KN0|1|2|G|1175
*
9KN0|1|2|U|1186
9KN0|1|2|G|1187
9KN0|1|2|A|1188
9KN0|1|2|A|1189
9KN0|1|2|A|1190
9KN0|1|2|C|1191
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain X
- Small ribosomal subunit protein uS12
- Chain h
- Small ribosomal subunit protein eS32
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