IL_9KN0_067

3D structure

PDB id

9KN0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat MERSr-CoV NL140422 Nsp1 bound to the Human 40S Ribosomal subunit-State2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

UGCAUGG*UCUGUGAUG

Length

16 nucleotides

Bulged bases

9KN0|1|2|C|1331, 9KN0|1|2|U|1494, 9KN0|1|2|U|1496, 9KN0|1|2|G|1497

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KN0|1|2|U|1329
9KN0|1|2|G|1330
9KN0|1|2|C|1331
9KN0|1|2|A|1332
9KN0|1|2|U|1333
9KN0|1|2|G|1334
9KN0|1|2|G|1335
*
9KN0|1|2|U|1492
9KN0|1|2|C|1493
9KN0|1|2|U|1494
9KN0|1|2|G|1495
9KN0|1|2|U|1496
9KN0|1|2|G|1497
9KN0|1|2|A|1498
9KN0|1|2|U|1499
9KN0|1|2|G|1500

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D

Small ribosomal subunit protein uS3

Chain K

Small ribosomal subunit protein eS10

Chain U

Small ribosomal subunit protein uS10

Chain d

Small ribosomal subunit protein uS14