IL_9KN0_071

3D structure

PDB id

9KN0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat MERSr-CoV NL140422 Nsp1 bound to the Human 40S Ribosomal subunit-State2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CAUGC*GAGG

Length

9 nucleotides

Bulged bases

9KN0|1|2|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9KN0_071 not in the Motif Atlas

Geometric match to IL_8GLP_337

Geometric discrepancy: 0.1166

The information below is about IL_8GLP_337

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37443.2

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

11

Unit IDs

9KN0|1|2|C|1395
9KN0|1|2|A|1396
9KN0|1|2|U|1397
9KN0|1|2|G|1398
9KN0|1|2|C|1399
*
9KN0|1|2|G|1447
9KN0|1|2|A|1448
9KN0|1|2|G|1449
9KN0|1|2|G|1450

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain Q

Small ribosomal subunit protein uS9

Chain R

Small ribosomal subunit protein eS17

Chain U

Small ribosomal subunit protein uS10

Chain g

Small ribosomal subunit protein RACK1