IL_9KN5_001

3D structure

PDB id

9KN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 40S ribosome complexed with HCV IRES, eIF1A and eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GCA*UAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9KN5_001 not in the Motif Atlas

Geometric match to IL_9H3G_023

Geometric discrepancy: 0.1665

The information below is about IL_9H3G_023

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

240

Unit IDs

9KN5|1|S2|G|23
9KN5|1|S2|C|24
9KN5|1|S2|A|25
*
9KN5|1|S2|U|649
9KN5|1|S2|A|650
9KN5|1|S2|U|651

Current chains

Chain S2

Chains: S2

Nearby chains

Chain SJ

40S ribosomal protein S9

Chain SX

40S ribosomal protein S23