IL_9KN5_002
3D structure
- PDB id
- 9KN5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the human 40S ribosome complexed with HCV IRES, eIF1A and eIF3
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UCU*AAA
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9KN5_002 not in the Motif Atlas
- Homologous match to IL_9PN5_143
- Geometric discrepancy: 0.2344
- The information below is about IL_9PN5_143
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_01003.7
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 240
Unit IDs
9KN5|1|S2|U|34
9KN5|1|S2|C|35
9KN5|1|S2|U|36
*
9KN5|1|S2|A|519
9KN5|1|S2|A|520
9KN5|1|S2|A|521
Current chains
- Chain S2
- Chains: S2
Nearby chains
- Chain SJ
- 40S ribosomal protein S9
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