IL_9KN5_029

3D structure

PDB id

9KN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 40S ribosome complexed with HCV IRES, eIF1A and eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAC*GGC

Length

6 nucleotides

Bulged bases

9KN5|1|S2|A|536

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9KN5_029 not in the Motif Atlas

Geometric match to IL_9I0V_003

Geometric discrepancy: 0.2511

The information below is about IL_9I0V_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_92286.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

6

Unit IDs

9KN5|1|S2|G|535
9KN5|1|S2|A|536
9KN5|1|S2|C|537
*
9KN5|1|S2|G|546
9KN5|1|S2|G|547
9KN5|1|S2|C|548

Current chains

Chain S2

Chains: S2

Nearby chains

Chain Se

40S ribosomal protein S30