IL_9KN5_067

3D structure

PDB id

9KN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 40S ribosome complexed with HCV IRES, eIF1A and eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

ACA*UUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9KN5_067 not in the Motif Atlas

Homologous match to IL_9H3G_217

Geometric discrepancy: 0.2501

The information below is about IL_9H3G_217

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75737.2

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

8

Unit IDs

9KN5|1|S2|A|1291
9KN5|1|S2|C|1292
9KN5|1|S2|A|1293
*
9KN5|1|S2|U|1306
9KN5|1|S2|U|1307
9KN5|1|S2|U|1308

Current chains

Chain S2

Chains: S2

Nearby chains

Chain Sd

40S ribosomal protein S29

Chain sh

Ubiquitin-40S ribosomal protein S27a