IL_9KN5_075
3D structure
- PDB id
- 9KN5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the human 40S ribosome complexed with HCV IRES, eIF1A and eIF3
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CAUGC*GAGG
- Length
- 9 nucleotides
- Bulged bases
- 9KN5|1|S2|U|1397
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9KN5_075 not in the Motif Atlas
- Geometric match to IL_8GLP_337
- Geometric discrepancy: 0.0766
- The information below is about IL_8GLP_337
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_37443.2
- Basepair signature
- cWW-cWW-L-R-cWW
- Number of instances in this motif group
- 11
Unit IDs
9KN5|1|S2|C|1395
9KN5|1|S2|A|1396
9KN5|1|S2|U|1397
9KN5|1|S2|G|1398
9KN5|1|S2|C|1399
*
9KN5|1|S2|G|1447
9KN5|1|S2|A|1448
9KN5|1|S2|G|1449
9KN5|1|S2|G|1450
Current chains
- Chain S2
- Chains: S2
Nearby chains
- Chain SQ
- 40S ribosomal protein S16
- Chain SR
- 40S ribosomal protein S17
- Chain SU
- 40S ribosomal protein S20
- Chain Sg
- Receptor of activated protein C kinase 1
Coloring options: