IL_9KN6_020

3D structure

PDB id

9KN6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES-dependent pre-48S translation initiation complex with eIF1A, eIF5B, and eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UAUCAA*UGACCACG

Length

14 nucleotides

Bulged bases

9KN6|1|S2|U|361, 9KN6|1|S2|C|399, 9KN6|1|S2|C|400

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KN6|1|S2|U|359
9KN6|1|S2|A|360
9KN6|1|S2|U|361
9KN6|1|S2|C|362
9KN6|1|S2|A|363
9KN6|1|S2|A|364
*
9KN6|1|S2|U|396
9KN6|1|S2|G|397
9KN6|1|S2|A|398
9KN6|1|S2|C|399
9KN6|1|S2|C|400
9KN6|1|S2|A|401
9KN6|1|S2|C|402
9KN6|1|S2|G|403

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SI

40S ribosomal protein S8

Chain SL

40S ribosomal protein S11

Chain SX

40S ribosomal protein S23