IL_9KN6_060

3D structure

PDB id

9KN6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES-dependent pre-48S translation initiation complex with eIF1A, eIF5B, and eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KN6|1|S2|G|1168
9KN6|1|S2|G|1169
9KN6|1|S2|A|1170
9KN6|1|S2|G|1171
9KN6|1|S2|U|1172
9KN6|1|S2|A|1173
9KN6|1|S2|U|1174
9KN6|1|S2|G|1175
*
9KN6|1|S2|U|1186
9KN6|1|S2|G|1187
9KN6|1|S2|A|1188
9KN6|1|S2|A|1189
9KN6|1|S2|A|1190
9KN6|1|S2|C|1191

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain Ln

60S ribosomal protein L41

Chain SX

40S ribosomal protein S23