IL_9KN6_067

3D structure

PDB id

9KN6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES-dependent pre-48S translation initiation complex with eIF1A, eIF5B, and eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

ACAGGAUUG*CUCGAUU

Length

16 nucleotides

Bulged bases

9KN6|1|S2|G|1285

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KN6|1|S2|A|1282
9KN6|1|S2|C|1283
9KN6|1|S2|A|1284
9KN6|1|S2|G|1285
9KN6|1|S2|G|1286
9KN6|1|S2|A|1287
9KN6|1|S2|U|1288
9KN6|1|S2|U|1289
9KN6|1|S2|G|1290
*
9KN6|1|S2|C|1309
9KN6|1|S2|U|1310
9KN6|1|S2|C|1311
9KN6|1|S2|G|1312
9KN6|1|S2|A|1313
9KN6|1|S2|U|1314
9KN6|1|S2|U|1315

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SK

40S ribosomal protein S10

Chain Sd

40S ribosomal protein S29

Chain Sf

40S ribosomal protein S12

Chain sh

Ubiquitin-40S ribosomal protein S27a