IL_9KN6_070

3D structure

PDB id

9KN6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES-dependent pre-48S translation initiation complex with eIF1A, eIF5B, and eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGCAU*AUG

Length

8 nucleotides

Bulged bases

9KN6|1|S2|C|1331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KN6|1|S2|U|1329
9KN6|1|S2|G|1330
9KN6|1|S2|C|1331
9KN6|1|S2|A|1332
9KN6|1|S2|U|1333
*
9KN6|1|S2|A|1498
9KN6|1|S2|U|1499
9KN6|1|S2|G|1500

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain 1A

Eukaryotic translation initiation factor 1A, X-chromosomal

Chain SD

40S ribosomal protein S3

Chain SK

40S ribosomal protein S10

Chain SU

40S ribosomal protein S20

Chain Sd

40S ribosomal protein S29

Chain zz

Internal ribosome entry site; IRES