IL_9KN6_109

3D structure

PDB id

9KN6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES-dependent pre-48S translation initiation complex with eIF1A, eIF5B, and eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGACCG*CGCUCAAUG

Length

15 nucleotides

Bulged bases

9KN6|1|zz|U|216

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KN6|1|zz|C|183
9KN6|1|zz|G|184
9KN6|1|zz|A|185
9KN6|1|zz|C|186
9KN6|1|zz|C|187
9KN6|1|zz|G|188
*
9KN6|1|zz|C|209
9KN6|1|zz|G|210
9KN6|1|zz|C|211
9KN6|1|zz|U|212
9KN6|1|zz|C|213
9KN6|1|zz|A|214
9KN6|1|zz|A|215
9KN6|1|zz|U|216
9KN6|1|zz|G|217

Current chains

Chain zz

HCV-IRES RNA

Nearby chains

Chain 3a

Eukaryotic translation initiation factor 3 subunit A