IL_9KO9_002

3D structure

PDB id

9KO9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of PsCas9-sgRNA binary complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GCUACU*AUC

Length

9 nucleotides

Bulged bases

9KO9|1|B|U|101, 9KO9|1|B|U|115

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9KO9_002 not in the Motif Atlas

Geometric match to IL_8HNT_002

Geometric discrepancy: 0.3119

The information below is about IL_8HNT_002

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.13

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

23

Unit IDs

9KO9|1|B|G|99
9KO9|1|B|C|100
9KO9|1|B|U|101
9KO9|1|B|A|102
9KO9|1|B|C|103
9KO9|1|B|U|104
*
9KO9|1|B|A|114
9KO9|1|B|U|115
9KO9|1|B|C|116

Current chains

Chain B

RNA (131-MER)

Nearby chains

Chain A

CRISPR-associated endonuclease Cas9