IL_9KRP_015

3D structure

PDB id

9KRP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES-dependent 48S translation initiation complex with eIF5B and eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUGAC*GGAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9KRP_015 not in the Motif Atlas

Geometric match to IL_8GLP_204

Geometric discrepancy: 0.1593

The information below is about IL_8GLP_204

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_87767.5

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

20

Unit IDs

9KRP|1|S2|C|188
9KRP|1|S2|U|189
9KRP|1|S2|G|190
9KRP|1|S2|A|191
9KRP|1|S2|C|192
*
9KRP|1|S2|G|207
9KRP|1|S2|G|208
9KRP|1|S2|A|209
9KRP|1|S2|U|210
9KRP|1|S2|G|211

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SI

40S ribosomal protein S8