IL_9KRP_041

3D structure

PDB id

9KRP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES-dependent 48S translation initiation complex with eIF5B and eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UCUC*GAA

Length

7 nucleotides

Bulged bases

9KRP|1|S2|C|748

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9KRP_041 not in the Motif Atlas

Geometric match to IL_8GLP_225

Geometric discrepancy: 0.3265

The information below is about IL_8GLP_225

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_19025.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

36

Unit IDs

9KRP|1|S2|U|747
9KRP|1|S2|C|748
9KRP|1|S2|U|749
9KRP|1|S2|C|750
*
9KRP|1|S2|G|793
9KRP|1|S2|A|794
9KRP|1|S2|A|795

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SE

40S ribosomal protein S4, X isoform

Chain SG

40S ribosomal protein S6