IL_9KRP_054

3D structure

PDB id

9KRP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES-dependent 48S translation initiation complex with eIF5B and eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AGGUUC*GUU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9KRP_054 not in the Motif Atlas

Homologous match to IL_9PN5_189

Geometric discrepancy: 0.1357

The information below is about IL_9PN5_189

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31690.2

Basepair signature

cWW-L-cWW-L-cWW-L

Number of instances in this motif group

7

Unit IDs

9KRP|1|S2|A|1042
9KRP|1|S2|G|1043
9KRP|1|S2|G|1044
9KRP|1|S2|U|1045
9KRP|1|S2|U|1046
9KRP|1|S2|C|1047
*
9KRP|1|S2|G|1071
9KRP|1|S2|U|1072
9KRP|1|S2|U|1073

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SO

40S ribosomal protein S14

Chain Sa

40S ribosomal protein S26