IL_9KZU_017

3D structure

PDB id

9KZU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES-dependently initiated CMV-stalled 80S ribosome (non-rotated state) in complexed with eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUGAAAC*GUGGAUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KZU|1|L5|G|415
9KZU|1|L5|U|416
9KZU|1|L5|G|417
9KZU|1|L5|A|418
9KZU|1|L5|A|419
9KZU|1|L5|A|420
9KZU|1|L5|C|421
*
9KZU|1|L8|G|13
9KZU|1|L8|U|14
9KZU|1|L8|G|15
9KZU|1|L8|G|16
9KZU|1|L8|A|17
9KZU|1|L8|U|18
9KZU|1|L8|C|19

Current chains

Chain L5

28S ribosomal RNA

Chain L8

5.8S_ribosomal_RNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LP

60S ribosomal protein L17

Chain Le

60S ribosomal protein L32