IL_9KZU_025

3D structure

PDB id

9KZU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES-dependently initiated CMV-stalled 80S ribosome (non-rotated state) in complexed with eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUGUCGGCG*CCCCGACC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KZU|1|L5|G|491
9KZU|1|L5|U|492
9KZU|1|L5|G|493
9KZU|1|L5|U|494
9KZU|1|L5|C|495
9KZU|1|L5|G|496
9KZU|1|L5|G|497
9KZU|1|L5|C|498
9KZU|1|L5|G|499
*
9KZU|1|L5|C|655
9KZU|1|L5|C|656
9KZU|1|L5|C|657
9KZU|1|L5|C|658
9KZU|1|L5|G|659
9KZU|1|L5|A|660
9KZU|1|L5|C|661
9KZU|1|L5|C|662

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LQ

60S ribosomal protein L18