IL_9KZU_058

3D structure

PDB id

9KZU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES-dependently initiated CMV-stalled 80S ribosome (non-rotated state) in complexed with eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGG*UAAUC

Length

8 nucleotides

Bulged bases

9KZU|1|L5|G|1625, 9KZU|1|L5|A|1637, 9KZU|1|L5|A|1638, 9KZU|1|L5|U|1639

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KZU|1|L5|G|1624
9KZU|1|L5|G|1625
9KZU|1|L5|G|1626
*
9KZU|1|L5|U|1636
9KZU|1|L5|A|1637
9KZU|1|L5|A|1638
9KZU|1|L5|U|1639
9KZU|1|L5|C|1640

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain LN

60S ribosomal protein L15

Chain LP

60S ribosomal protein L17

Chain Lj

60S ribosomal protein L37

Chain zx

nascent peptide