IL_9KZU_067

3D structure

PDB id

9KZU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES-dependently initiated CMV-stalled 80S ribosome (non-rotated state) in complexed with eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UCUUGGGG*CUCAA

Length

13 nucleotides

Bulged bases

9KZU|1|L5|U|1757

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KZU|1|L5|U|1754
9KZU|1|L5|C|1755
9KZU|1|L5|U|1756
9KZU|1|L5|U|1757
9KZU|1|L5|G|1758
9KZU|1|L5|G|1759
9KZU|1|L5|G|1760
9KZU|1|L5|G|1761
*
9KZU|1|L5|C|1772
9KZU|1|L5|U|1773
9KZU|1|L5|C|1774
9KZU|1|L5|A|1775
9KZU|1|L5|A|1776

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LD

60S ribosomal protein L5

Chain LI

60S ribosomal protein L10-like