IL_9KZU_078

3D structure

PDB id

9KZU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES-dependently initiated CMV-stalled 80S ribosome (non-rotated state) in complexed with eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UAUAGACAG*CCGAA

Length

14 nucleotides

Bulged bases

9KZU|1|L5|A|1960

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KZU|1|L5|U|1957
9KZU|1|L5|A|1958
9KZU|1|L5|U|1959
9KZU|1|L5|A|1960
9KZU|1|L5|G|1961
9KZU|1|L5|A|1962
9KZU|1|L5|C|1963
9KZU|1|L5|A|1964
9KZU|1|L5|G|1965
*
9KZU|1|L5|C|2022
9KZU|1|L5|C|2023
9KZU|1|L5|G|2024
9KZU|1|L5|A|2025
9KZU|1|L5|A|2026

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain Lm

Ubiquitin-60S ribosomal protein L40