IL_9KZU_084

3D structure

PDB id

9KZU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES-dependently initiated CMV-stalled 80S ribosome (non-rotated state) in complexed with eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCUUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

9KZU|1|L5|U|2305

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9KZU_084 not in the Motif Atlas

Homologous match to IL_8GLP_086

Geometric discrepancy: 0.1251

The information below is about IL_8GLP_086

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90775.4

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

31

Unit IDs

9KZU|1|L5|C|2302
9KZU|1|L5|C|2303
9KZU|1|L5|U|2304
9KZU|1|L5|U|2305
9KZU|1|L5|G|2306
9KZU|1|L5|A|2307
9KZU|1|L5|A|2308
9KZU|1|L5|G|2309
*
9KZU|1|L5|U|2329
9KZU|1|L5|G|2330
9KZU|1|L5|G|2331
9KZU|1|L5|A|2332
9KZU|1|L5|G|2333

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain L8

5.8S ribosomal RNA; 5.8S rRNA

Chain LC

60S ribosomal protein L4

Chain LY

60S ribosomal protein L26

Chain Le

60S ribosomal protein L32